species:   Rhsol
pid:       PID0502
parent:    Rhi-milR-145
paralog:   
locus:     KB317709.1:81551-81648
matures:   ['UGGGAUGGGUGGGGGUGUUUA', 'AUCAUUUUAUCACGUACU']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317709.1:81551-81648

4 out of bounds
14 alignments
14 proper strand
13 stranded perfect matches

        ************************   *********************                                          
UUGACUGGGGUGGGAUGGGUGGGGGUGUUUAGCGAUUGAUCAUUUUAUCACGUACUCUGUGAUCGAGACGGAACCCCCGCGGGGGUAUUCGUCUGUGU
.(.((.((((((.(.(((...((((((.(((.....))).)))))).)))).)))))))).)...((((((((((((....))))).)))))))....
----------UGGGAUGGGUGGGGGUGUUUA------------------------------------------------------------------- l=21 a=0 c
--------------------------------------AUCAUUUUAUCACGUACU------------------------------------------ l=18 a=0 c*
----------UGGGAUGGGUGGGGGUGUUUAG------------------------------------------------------------------ l=22 a=10 ma
-------------------------------------GAUCAUUUUAUCACGUACU------------------------------------------ l=19 a=0 ma*

---------GUGGGAUGGGUGGGGGUGUUUAG------------------------------------------------------------------ l=23 a=3 
----------UGGGAUGGGUGGGGGUGUUUAG------------------------------------------------------------------ l=22 a=10 (ma)
----------UGGGAUGGGUGGGGGUGUUUAGu----------------------------------------------------------------- l=23 a=1 

mb-01011
ax-1001111
ku-01
ss-111111101110
fn-111
